Free Standard AU & NZ Shipping For All Book Orders Over $80!
Register      Login
Functional Plant Biology Functional Plant Biology Society
Plant function and evolutionary biology
REVIEW

The polyphasic chlorophyll a fluorescence rise measured under high intensity of exciting light

Dušan Lazár
+ Author Affiliations
- Author Affiliations

Palacký University, Faculty of Science, Department of Experimental Physics, Laboratory of Biophysics, tř. Svobody 26, 771 46 Olomouc, Czech Republic. Email: lazard@seznam.cz

Functional Plant Biology 33(1) 9-30 https://doi.org/10.1071/FP05095
Submitted: 19 April 2005  Accepted: 18 August 2005   Published: 3 January 2006

Abstract

Chlorophyll a fluorescence rise caused by illumination of photosynthetic samples by high intensity of exciting light, the O–J–I–P (O–I1–I2–P) transient, is reviewed here. First, basic information about chlorophyll a fluorescence is given, followed by a description of instrumental set-ups, nomenclature of the transient, and samples used for the measurements. The review mainly focuses on the explanation of particular steps of the transient based on experimental and theoretical results, published since a last review on chlorophyll a fluorescence induction [Lazár D (1999) Biochimica et Biophysica Acta 1412, 1–28]. In addition to ‘old’ concepts (e.g. changes in redox states of electron acceptors of photosystem II (PSII), effect of the donor side of PSII, fluorescence quenching by oxidised plastoquinone pool), ‘new’ approaches (e.g. electric voltage across thylakoid membranes, electron transport through the inactive branch in PSII, recombinations between PSII electron acceptors and donors, electron transport reactions after PSII, light gradient within the sample) are reviewed. The K-step, usually detected after a high-temperature stress, and other steps appearing in the transient (the H and G steps) are also discussed. Finally, some applications of the transient are also mentioned.

Keywords: fluorescence induction, G step, H step, K step, model, O–J–I–P (O–I1–I2–P) transient, theory.


Acknowledgments

This work was financially supported by the Ministry of Education of the Czech Republic by a grant number MSM 6198959215. This review was also a part of the Habilitation Thesis of the author (Lazár 2005). I thank Professors Govindjee, Ulrich Schreiber, and Reto J. Strasser for their valuable comments that have improved this presentation. In addition, Govindjee has also edited parts of the manuscript.


References


Albert KR, Mikkelsen TN, Ro-Poulsen H (2005) Effects of ambient versus reduced UV-B radiation on high arctic Salix arctica assessed by measurements and calculations of chlorophyll a fluorescence parameters from fluorescence transients. Physiologia Plantarum 124, 208–226.
Crossref | GoogleScholarGoogle Scholar | open url image1

Avarmaa R, Soovik T, Tamkivi A, Tonissoo B (1977) Fluorescence lifetimes of chlorophyll-a and some related compounds at low temperatures. Studia Biophysica Berlin 65, 213–218. open url image1

Baake E, Strasser RJ (1990) A differential equation model for the description of the fast fluorescence rise (O–I–D–P-transient) in leaves. In ‘Current research in photosynthesis. Vol. II’. (Ed. M Baltscheffsky) pp. 567–570. (Kluwer Academic Publishers: Dordrecht)

Baake E, Schlöder JP (1992) Modelling the fast fluorescence rise of photosynthesis. Bulletin of Mathematical Biology 54, 999–1021.
Crossref | GoogleScholarGoogle Scholar | open url image1

Baker NR, Rosenqvist E (2004) Applications of chlorophyll fluorescence can improve crop production strategies: an examination of future possibilities. Journal of Experimental Botany 55, 1607–1621.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Barthélemy X, Popovic R, Franck F (1997) Studies on the O–J–I–P transient of chlorophyll fluorescence in relation to photosystem II assembly and heterogeneity in plastids of greening barley. Journal of Photochemistry and Photobiology. B, Biology 39, 213–218.
Crossref | GoogleScholarGoogle Scholar | open url image1

Barzda V, Vengris M, Valkunas L, van Grondelle R, van Amerongen H (2000) Generation of fluorescence quenchers from the triplet states of chlorophylls in the major light-harvesting complex II from green plants. Biophysical Journal 39, 10468–10477. open url image1

Berry S, Rumberg B (2001) Kinetic modeling of the photosynthetic electron transport chain. Bioelectrochemistry 53, 35–53.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Björkman O, Demmig B (1987) Photon yield of O2 evolution of chlorophyll fluorescence characteristics at 77 K among vascular plants of diverse origins. Planta 170, 489–504.
Crossref | GoogleScholarGoogle Scholar | open url image1

Bouges-Bocquet B (1973) Electron transfer between the two photosystems in spinach chloroplasts. Biochimica et Biophysica Acta 314, 250–256.
PubMed |
open url image1

Breton J (1983) The emission of chlorophyll in vivo. Antenna fluorescence or ultrafast luminescence from reaction centre pigments. FEBS Letters 159, 1–5.
Crossref | GoogleScholarGoogle Scholar | open url image1

Breton J, Wakeham MC, Fyfe PK, Jones MR, Nabedryk E (2004) Characterization of the bonding interactions of QB upon photoreduction via A-branch or B-branch electron transfer in mutant reaction centers from Rhodobacter sphaeroides.  Biochimica et Biophysica Acta 1656, 127–138.
PubMed |
open url image1

Briantais J-M, Dacosta J, Goulas Y, Ducruet J-M, Moya I (1996) Heat stress induces in leaves an increase of the minimum level of chlorophyll fluorescence, F0: a time-resolved analysis. Photosynthesis Research 48, 189–196.
Crossref | GoogleScholarGoogle Scholar | open url image1

Brody SS (2002) Fluorescence lifetime, yield, energy transfer and spectrum in photosynthesis, 1950–1960. Photosynthesis Research 73, 127–132.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Bruce D, Samson G, Carpenter C (1997) The origins of nonphotochemical quenching of chlorophyll fluorescence in photosynthesis. Direct quenching by P680+ in photosystem II enriched membranes at low pH. Biochemistry 36, 749–755.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Bukhov NG, Govindachary S, Egorova EA, Joly D, Carpentier R (2003) N,N,N′,N′-tetramethyl-p-phenylenediamine initiates the appearance of a well-resolved I peak in the kinetics of chlorophyll fluorescence rise in isolated thylakoids. Biochimica et Biophysica Acta 1607, 91–96.
PubMed |
open url image1

Bukhov NG, Egorova EA, Govindachary S, Carpentier R (2004) Changes in polyphasic chlorophyll a fluorescence induction curve upon inhibition of donor or acceptor side of photosystem II in isolated thylakoids. Biochimica et Biophysica Acta 1657, 121–130.
PubMed |
open url image1

Bulychev AA, Niyazova MM (1989) Modelling of potential-depending changes of chlorophyll fluorescence in the photosystem 2. Biofizika 34, 63–67. open url image1

Bulychev AA, Vredenberg WJ (1999) Light-triggered electrical events in the thylakoid membrane of plant chloroplasts. Physiologia Plantarum 105, 577–584.
Crossref | GoogleScholarGoogle Scholar | open url image1

Bulychev AA, Vredenberg WJ (2001) Modulation of photosystem II chlorophyll fluorescence by electrogenic events generated by photosystem I. Bioelectrochemistry 54, 157–168.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Bussotti F (2004) Assessment of stress conditions in Quercus ilex L. leaves by O–J–I–P chlorophyll alpha fluorescence analysis. Plant Biosystems 138, 101–109.
Crossref | GoogleScholarGoogle Scholar | open url image1

Bussotti F, Agati G, Desotgiu R, Matteini P, Tani C (2005) Ozone foliar symptoms in woody plant species assessed with ultrastructural and fluorescence analysis. New Phytologist 166, 941–955.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Butler WL (1972) On the primary nature of fluorescence yield changes associated with photosynthesis. Proceedings of the National Academy of Sciences USA 69, 3420–3422. open url image1

Butler WL (1977) Chlorophyll fluorescence: a probe for electron transfer and energy transfer. In ‘Encyclopedia of plant physiology. Photosynthesis I, volume 5’. (Eds VA Trebs, M Avron) pp. 149–167. (Springer-Verlag: Berlin)

Butler WL (1978) Energy distribution in the photochemical apparatus of photosynthesis. Annual Review of Plant Physiology and Plant Molecular Biology 29, 345–378. open url image1

Byrdin M, Rimke I, Schlodder E, Stehlik D, Roelofs TA (2000) Decay kinetics and quantum yields of fluorescence in photosystem I from Synechococcus elongatus with P700 in the reduced and oxidized state: are the kinetics of excited state decay trap-limited or transfer-limited? Biophysical Journal 79, 992–1007.
PubMed |
open url image1

Chaerle L, Van Der Straeten D (2000) Imaging techniques and the early detection of plant stress. Trends in Plant Science 5, 495–501.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Chaerle L, Van Der Straeten D (2001) Seeing is believing: imaging techniques to monitor plant health. Biochimica et Biophysica Acta 1519, 153–166.
PubMed |
open url image1

Chylla RA, Whitmarsh J (1989) Inactive photosystem II complexes in leaves. Plant Physiology 90, 765–772. open url image1

Codrea CM, Aittokallio T, Keränen M, Tyystjärvi E, Nevalainen OS (2003) Feature learning with a genetic algorithm for fluorescence fingerprinting of plant species. Pattern Recognition Letters 24, 2663–2673.
Crossref | GoogleScholarGoogle Scholar | open url image1

Codrea CM, Aittokallio T, Keränen M, Tyystjärvi E, Nevalainen OS (2004) Genetic feature learning algorithm for fluorescence fingerprinting of plants. Lecture Notes in Computer Science 2936, 371–384. open url image1

Crofts AR, Wraight CA (1983) The electrochemical domain of photosynthesis. Biochimica et Biophysica Acta 726, 149–185. open url image1

Dau H (1994) Molecular mechanism and quantitative models of variable photosystem II fluorescence. Photochemistry and Photobiology 60, 1–23. open url image1

Dau H, Sauer K (1991) Electric field effect on chlorophyll fluorescence and its relation to photosystem II charge separation reactions studied by a salt-jump technique. Biochimica et Biophysica Acta 1098, 49–60. open url image1

Dau H, Sauer K (1992) Electric field effect on the picosecond fluorescence of photosystem II and its relation to the energetics and kinetics of primary charge separation. Biochimica et Biophysica Acta 1102, 91–106. open url image1

Dau H, Windecker R, Hansen U-P (1991) Effect of light-induced changes in thylakoid voltage on chlorophyll fluorescence of Aegopodium podagraria leaves. Biochimica et Biophysica Acta 1057, 337–345. open url image1

Delosme R (1967) Étude de l’induction de fluorescence des algues vertes et des chloroplastes au début d’une illumination intense. Biochimica et Biophysica Acta 143, 108–128.
PubMed |
open url image1

Deprez J, Dobek A, Geacintov NE, Paillotin G, Breton J (1983) Probing fluorescence induction in chloroplast on a nanosecond time scale utilizing picosecond laser pulse pairs. Biochimica et Biophysica Acta 725, 444–454. open url image1

Duysens LNM, Sweers HE (1963) Mechanism of the two photochemical reactions in algae as studied by means of fluorescence. In ‘Studies on microalgae and photosynthetic bacteria’. (Ed. ) pp. 353–372. (University of Tokyo Press: Tokyo, Japan)

Epitalawage N, Eggenberg P, Strasser RJ (2003) Use of fast chlorophyll a fluorescence technique in detecting drought and salinity tolerant chickpea (Cicer arietinum L.) varieties. Archives des Sciences Genéve 56, 79–93. open url image1

Fell DA (1992) Metabolic control analysis: a survey of its theoretical and experimental development. Biochemical Journal 286, 313–330.
PubMed |
open url image1

Ferreira KN, Iverson TM, Maghlaoui K, Barber J, Iwata S (2004) Architecture of the photosynthetic oxygen-evolving center. Science 303, 1831–1838.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Franck F, Juneau P, Popovic R (2002) Resolution of the photosystem I and photosystem II contributions to chlorophyll fluorescence of intact leaves at room temperature. Biochimica et Biophysica Acta 1556, 239–246.
PubMed |
open url image1

Franck F, Dewez D, Popovic R (2005) Changes in the room-temperature emission spectrum of chlorophyll during fast and slow phases of the Kautsky effect in intact leaves. Photochemistry and Photobiology 81, 431–436.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Fridlyand LE, Backhausen JE, Scheibe R (1998) Flux control of the malate valve in leaf cells. Archives of Biochemistry and Biophysics 349, 290–298.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Frolov D, Wakeham MC, Andrizhiyevskaya EG, Jones MR, van Grondelle R (2005) Investigation of B-branch electron transfer by femtosecond time resolved spectroscopy in a Rhodobacter sphaeroides reaction centre that lacks the QA ubiquinone. Biochimica et Biophysica Acta 1707, 189–198.
PubMed |
open url image1

Giersch C (2000) Mathematical modelling of metabolism. Current Opinion in Plant Biology 3, 249–253.
PubMed |
open url image1

Gilmore AM, Hazlett TL, Debrunner PG, Govindjee (1996) Photosystem II chlorophyll a fluorescence lifetimes and intensity are independent of the antenna size differences between barley wild-type and chlorina mutants: photochemical quenching and xanthophyll cycle-dependent nonphotochemical quenching of fluorescence. Photosynthesis Research 48, 171–187.
Crossref | GoogleScholarGoogle Scholar | open url image1

Gilmore A, Itoh SS, Govindjee (2000) Global spectral-kinetic analysis of room temperature chlorophyll a fluorescence from light harvesting antenna mutants of barley. Philosophical Transactions of Royal Society of London Series B-Biological Sciences 335, 1–14. open url image1

Goltsev V, Yordanov I (1997) Mathematical model of prompt and delayed chlorophyll fluorescence induction kinetics. Photosynthetica 33, 571–586. open url image1

Goltsev V, Zaharieva I, Lambrev P, Yordanov I, Strasser R (2003) Simultaneous analysis of prompt and delayed chlorophyll a fluorescence in leaves during the induction period of dark to light adaptation. Journal of Theoretical Biology 225, 171–183.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Goltsev V, Chernev P, Zaharieva I, Lambrev P, Strasser RJ (2005) Kinetics of delayed chlorophyll a fluorescence registered in milliseconds time range. Photosynthesis Research 84, 209–215.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Govindjee (1995) Sixty-three years since Kautsky: chlorophyll a fluorescence. Australian Journal of Plant Physiology 22, 131–160. open url image1

Govindjee (2004) Chlorophyll a fluorescence: a bit of basics and history. In ‘Chlorophyll fluorescence: a signature of photosynthesis’. (Eds GC Papageorgiou,  Govindjee) pp. 1–42. (Springer: Dordrecht)

Govindjee , Amesz J, Fork DC (Eds) (1986) ‘Light emission by plants and bacteria.’ (Eds  Govindjee, J Amesz, DC Fork) (Academic Press: Orlando, FL)

Graan T, Ort DR (1983) Initial events in the regulation of electron transfer in chloroplasts. The role of the membrane potential. Journal of Biological Chemistry 258, 2831–2836.
PubMed |
open url image1

Graan T, Ort DR (1984) Quantitation of the rapid electron donors to P700, the functional plastoquinone pool, and the ratio of the photosystems in spinach chloroplasts. Journal of Biological Chemistry 259, 14003–14010.
PubMed |
open url image1

Graan T, Ort DR (1986) Detection of oxygen-evolving photosystem II centers inactive in plastoquinone reduction. Biochimica et Biophysica Acta 852, 320–330. open url image1

Groot ML, Pawlowicz NP, van Wilderen JLGW, Breton J, van Stokkum IHM, van Grondelle R (2005) Initial electron donor and acceptor in isolated photosystem II reaction centers identified with femtosecond mid-IR spectroscopy. Proceedings of the National Academy of Sciences USA 102, 13087–13092.
Crossref |
open url image1

Gravano E, Bussotti F, Strasser RJ, Schaub M, Novak K, Skelly J, Tani C (2004) Ozone symptoms in leaves of woody plants in open-top chambers: ultrastructural and physiological characteristics. Physiologia Plantarum 121, 620–633.
Crossref | GoogleScholarGoogle Scholar | open url image1

Guissé B, Srivastava A, Strasser RJ (1995a) The polyphasic rise of the chlorophyll a fluorescence (O–K–J–I–P) in heat-stressed leaves. Archives des Sciences Genéve 48, 147–160. open url image1

Guissé B, Srivastava A, Strasser RJ (1995) Effects of high temperature and water stress on the polyphasic chlorophyll a fluorescence transient of potato leaves. In ‘Photosynthesis: from light to biosphere. Vol. IV’. (Ed. P Mathis) pp. 913–916. (Kluwer Academic Publishers: Dordrecht)

Haldimann P, Tsimilli-Michael M (2005) Non-photochemical quenching of chlorophyll a fluorescence by oxidised plastoquinone: new evidences based on modulation of the redox state of the endogenous plastoquinone pool in broken spinach chloroplasts. Biochimica et Biophysica Acta 1706, 239–249.
PubMed |
open url image1

Hansen U-P, Dau H, Brüning B, Fritsch T, Moldaenke C (1991) Linear analysis applied to the comparative study of the I–D–P phase of chlorophyll fluorescence as induced by actinic PS-II light, PS-I light and changes in CO2-concentration. Photosynthesis Research 28, 119–130.
Crossref | GoogleScholarGoogle Scholar | open url image1

Heredia P, De Las Rivas J (2003) Fluorescence induction of photosystem II membranes shows the steps till reduction and protonation of the quinone pool. Journal of Plant Physiology 160, 1499–1506.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Hill R, Larkum AWD, Frankart C, Kühl M, Ralph PJ (2004) Loss of functional photosystem II reaction centres in zooxanthellae of coral exposed to bleaching conditions: using fluorescence rise kinetics. Photosynthesis Research 82, 59–72.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Holzwarth AR, Müller MG, Niklas J, Lubitz W (2005a) Charge recombination fluorescence in photosystem I reaction centers from Chlamydomonas reinhardtii. Journal of Physical Chemistry B 109, 5903–5911.
Crossref |
open url image1

Holzwarth AR , Müller MG , Niklas J , Lubitz W (2005b) Ultrafast transient absorption studies on photosystem I reaction centers from Chlamydomonas reinhardtii. 2. Mutations near the P700 reaction center chlorophylls provide insight into the nature of the primary electron donor. Biophysical Journal, (in press).

Hsu B-D (1992a) The active photosystem II centers can make a significant contribution to the initial fluorescence rise from F 0 to F i. Plant Science 81, 169–174.
Crossref | GoogleScholarGoogle Scholar | open url image1

Hsu B-D (1992b) A theoretical study on the fluorescence induction curve of spinach thylakoids in the absence of DCMU. Biochimica et Biophysica Acta 1140, 30–36. open url image1

Hsu B-D (1993) Evidence for the contribution of the S-state transitions of oxygen evolution to the initial phase of fluorescence induction. Photosynthesis Research 36, 81–88.
Crossref | GoogleScholarGoogle Scholar | open url image1

Hsu B-D, Lee J-Y (1995) Fluorescence quenching by plastoquinone in an oxygen evolving photosystem-II-enriched preparation. Journal of Photochemistry and Photobiology. B, Biology 30, 57–61.
Crossref | GoogleScholarGoogle Scholar | open url image1

Hsu B-D, Leu K-L (2003) A possible origin of the middle phase of polyphasic chlorophyll fluorescence transient. Functional Plant Biology 30, 571–576.
Crossref | GoogleScholarGoogle Scholar | open url image1

Ikegami I (1976) Fluorescence changes related in the primary photochemical reaction in the P-700-enriched particles isolated from spinach chloroplasts. Biochimica et Biophysica Acta 449, 245–258.
PubMed |
open url image1

Ilík P Schansker G Kotabová E Váczi P Strasser RJ Bartát M 2006 A dip in the chlorophyll fluorescence induction at 0.2–2 s in Trebouxia-possessing lichens reflects a fast reoxidation of photosystem I. A comparison with higher plants. Biochimica et Biophysica Acta, (in press).

Itoh S, Sugiura K (2004) Fluorescence of photosystem I. In ‘Chlorophyll fluorescence: a signature of photosynthesis’. (Eds GC Papageorgiou,  Govindjee) pp. 231–250. (Springer: Dordrecht)

Joliot P, Joliot A (1977) Evidence for a double hit process in photosystem II based on fluorescence studies. Biochimica et Biophysica Acta 462, 559–574.
PubMed |
open url image1

Joliot P, Joliot A (1979) Comparative study of the fluorescence yield and of the C550 absorption change at room temperature. Biochimica et Biophysica Acta 546, 93–105.
PubMed |
open url image1

Joliot P, Lavergne J, Béal D (1992) Plastoquinone compartmentation in chloroplasts. I. Evidence for domains with different rates of photo-reduction. Biochimica et Biophysica Acta 1101, 1–12. open url image1

Joly D, Bigras C, Harnois J, Govindachary S, Carpentier R (2005) Kinetic analyses of the OJIP chlorophyll fluorescence rise in thylakoid membranes. Photosynthesis Research 84, 107–112.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Joshi MJ, Mohanty P (1995) Probing photosynthetic performance by chlorophyll-a-fluorescence — analysis and interpretation of fluorescence parameters. Journal of Scientific and Industrial Research 54, 155–174. open url image1

Kamiya N, Shen J-R (2003) Crystal structure of oxygen-evolving photosystem II from Thermosynechococcus vulcanus at 3.8-Å resolution. Proceedings of the National Academy of Sciences USA 100, 98–103.
Crossref | GoogleScholarGoogle Scholar | open url image1

Kaňa R, Lazár D, Prášil O, Nauš J (2002) Experimental and theoretical studies on the excess capacity of photosystem II. Photosynthesis Research 72, 271–284.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Keränen M, Aro E-M, Tyystjärvi E, Nevalainen OS (2003) Automatic plant identification with chlorophyll fluorescence fingerprinting. Precision Agriculture 4, 53–67.
Crossref | GoogleScholarGoogle Scholar | open url image1

Keuper HJK, Sauer K (1989) Effect of photosystem-II reaction center closure on nanosecond fluorescence relaxation kinetics. Photosynthesis Research 20, 85–103.
Crossref | GoogleScholarGoogle Scholar | open url image1

Kirchhoff H, Horstmann S, Weis E (2000) Control of the photosynthetic electron transport by PQ diffusion microdomains in thylakoids of higher plants. Biochimica et Biophysica Acta 1459, 148–168.
PubMed |
open url image1

Kirmaier C, Laible PD, Hanson DK, Holten D (2003) B-side charge separation in bacterial photosynthetic reaction centers: nanosecond time scale electron transfer from HB – to QB. Biochemistry 42, 2016–2024.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Koblížek M, Kaftan D, Nedbal L (2001) On the relationship between the non-photochemical quenching of the chlorophyll fluorescence and the photosystem II light harvesting efficiency. A repetitive flash fluorescence induction study. Photosynthesis Research 68, 141–152.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Kok B, Forbush B, McGloin M (1970) Cooperation of charges in photosynthetic O2 evolution — I. A linear four step mechanism. Photochemistry and Photobiology 11, 457–475.
PubMed |
open url image1

Kouřil R, Lazár D, Ilík P, Skotnica J, Krchňák P, Nauš J (2004) High-temperature induced chorophyll fluorescence rise in plants at 40–50ºC: experimental and theoretical approach. Photosynthesis Research 81, 49–66.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Kramer DM, DiMarco G, Loreto F (1995) Contribution of plastoquinone quenching to saturation pulse-induced rise of chlorophyll fluorescence in leaves. In ‘Photosynthesis: from light to biosphere. Vol. I’. (Ed. P Mathis) pp. 147–150. (Kluwer Academic Publishers: Dordrecht)

Krause GH, Weis E (1991) Chlorophyll fluorescence and photosynthesis: the basis. Annual Reviews in Plant Physiology and Plant Molecular Biology 42, 313–349.
Crossref | GoogleScholarGoogle Scholar | open url image1

Kurreck J, Renger G (1998) Investigation of the plastoquinone pool size and fluorescence quenching in photosystem II (PS II) membrane fragments. In ‘Photosynthesis: mechanisms and effects. Vol. 2’. (Ed. G Garab) pp. 1157–1160. (Kluwer Academic Publishers: Dordrecht)

Kurreck J, Schödel R, Renger G (2000) Investigation of the plastoquinone pool size and fluorescence quenching in thylakoid membranes and photosystem II (PS II) membrane fragments. Photosynthesis Research 63, 171–182.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Laible PD, Zipfel W, Owens TG (1994) Excited state dynamics in chlorophyll-based antennae: the role of transfer equilibrium. Biophysical Journal 66, 844–860.
PubMed |
open url image1

Latimer P, Bannister TT, Rabinowitch E (1956) Quantum yields of fluorescence of plant pigments. Science 124, 585–586. open url image1

Lavergne J, Briantais J-M (1996) Photosystem II heterogeneity. In ‘Oxygenic photosynthesis: the light reactions’. (Eds DR Ort, CF Yocum) pp. 265–287. (Kluwer Academic Publishers: Dordrecht)

Lavergne J, Leci E (1993) Properties of inactive photosystem II centers. Photosynthesis Research 35, 323–343.
Crossref | GoogleScholarGoogle Scholar | open url image1

Lavergne J, Rappaport F (1998) Stabilization of charge separation and photochemical misses in photosystem II. Biochemistry 37, 7899–7906.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Lazár D (1999) Chlorophyll a fluorescence induction. Biochimica et Biophysica Acta 1412, 1–28.
PubMed |
open url image1

Lazár D (2003) Chlorophyll a fluorescence rise induced by high light illumination of dark-adapted plant tissue studied by means of a model of photosystem II and considering photosystem II heterogeneity. Journal of Theoretical Biology 220, 469–503.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Lazár D (2005) The O–K–J–I–P chlorophyll a fluorescence transient: theory and experiments. Habilitation Thesis, Palacký (University Olomouc: Czech Republic)

Lazár D, Ilík P (1997) High-temperature induced chlorophyll fluorescence changes in barley leaves. Comparison of the critical temperatures determined from fluorescence induction and from fluorescence temperature curve. Plant Science 124, 159–164.
Crossref | GoogleScholarGoogle Scholar | open url image1

Lazár D, Nauš J (1998) Statistical properties of chlorophyll fluorescence induction parameters. Photosynthetica 35, 121–127.
Crossref | GoogleScholarGoogle Scholar | open url image1

Lazár D, Pospíšil P (1999) Mathematical simulation of chlorophyll a fluorescence rise measured with 3-(3′,4′-dichlorophenyl)-1,1-dimethylurea-treated barley leaves at room and high temperatures. European Biophysics Journal 28, 468–477.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Lazár D, Brokeš M, Nauš J, Dvořák L (1998) Mathematical modelling of 3-(3′,4′-dichlorophenyl)-1,1-dimethyl urea action in plant leaves. Journal of Theoretical Biology 191, 79–86.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Lazár D, Ilík P, Nauš J (1997a) An appearance of K-peak in fluorescence induction depends on the acclimation of barley leaves to higher temperature. Journal of Luminescence 72–74, 595–598.
Crossref | GoogleScholarGoogle Scholar | open url image1

Lazár D, Nauš J, Matoušková M, Flašarová M (1997b) Mathematical modelling of changes in chlorophyll fluorescence induction caused by herbicides. Pesticide Biochemistry and Physiology 57, 200–210.
Crossref | GoogleScholarGoogle Scholar | open url image1

Lazár D, Pospíšil P, Nauš J (1999) Decrease of fluorescence intensity after the K step in chlorophyll a fluorescence induction is suppressed by electron acceptors and donors to photosystem II. Photosynthetica 37, 255–265.
Crossref | GoogleScholarGoogle Scholar | open url image1

Lazár D, Tomek P, Ilík P, Nauš J (2001) Determination of the antenna heterogeneity of photosystem II by direct simultaneous fitting of several fluorescence rise curves measured with DCMU at different light intensities. Photosynthesis Research 68, 247–257.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Lazár D, Nauš J, Hlaváčková V, Špundová M, Mieslerová B (2003) Statistical changes in chlorophyll fluorescence rise within adaxial leaf area caused by worsening of photosystem II function. In ‘Proceedings of international conference on advances in statistical inferential methods: theory and applications’. (Ed. V Voinov) pp. 339–346. (KIMEP: Almaty, Kazakhstan Republic)

Lazár D, Sušila P, Nauš J (2005) Statistical properties of parameters evaluated from the O–J–I–P chlorophyll a fluorescence transients and their changes upon high temperature stress. In ‘Fundamental aspects to global perspectives. [CD-ROM]’. (Eds A van der Est, D Bruce) (Allen Press: Montreal)

Lazár D, Ilík P, Kruk J, Strzałka K, Nauš J (2005b) A theoretical study on effect of the initial redox state of cytochrome b559 on maximal chlorophyll fluorescence level (FM). Implications for photoinhibition of photosystem II. Journal of Theoretical Biology 233, 287–300.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Lazár D, Kaňa R, Klinkovský T, Nauš J (2005c) Experimental and theoretical study on high temperature induced changes in chlorophyll a fluorescence oscillations from barley leaves upon 2% CO2. Photosynthetica 43, 13–27.
Crossref | GoogleScholarGoogle Scholar | open url image1

Lazár D , Sušila P , Nauš J (2006)Early detection of plant stress from changes in distributions of chlorophyll a fluorescence parameters measured with fluorescence imaging. Journal of Fluorescence, (in press).

Lebedeva GV, Belyaeva NE, Demin OV, Riznichenko GY, Rubin AB (2002) Kinetic model of primary photosynthetic processes in chloroplasts. Description of the fast phase of chlorophyll fluorescence induction under different light intensities. Biophysics 47, 968–980. open url image1

Leibl W, Breton J, Deprez J, Trissl H-W (1989) Photoelectric study on the kinetics of trapping and charge stabilization in oriented PS II membranes. Photosynthesis Research 22, 257–275.
Crossref | GoogleScholarGoogle Scholar | open url image1

Müller A, Lumry R, Walker MS (1969) Light-intensity dependence of in vivo fluorescence lifetime of chlorophyll. Photochemistry and Photobiology 9, 113–126.
PubMed |
open url image1

Marder JB, Raskin VI (1993) The assembly of chlorophyll into pigment–protein complexes. Photosynthetica 28, 243–248. open url image1

Mathis P, Paillotin G (1981) Primary processes of photosynthesis. In ‘The biochemistry of plants. Vol. 8’. (Eds MD Hatch, NK Boardman) pp. 97–161. (Academic Press: New York)

Mauzerall D (1972) Light-induced fluorescence changes in Chlorella, and the primary photoreactions the production of oxygen. Proceedings of the National Academy of Sciences USA 69, 1358–1362. open url image1

Maxwell K, Johnson GN (2000) Chlorophyll fluorescence — a practical guide. Journal of Experimental Botany 51, 659–668.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

McCauley S, Melis A (1987) Quantitation of photosystem II activity in spinach chloroplasts. Effect of artificial quinone acceptors. Photochemistry and Photobiology 46, 543–550. open url image1

Melis A (1985) Functional properties of photosystem IIβ in spinach chloroplasts. Biochimica et Biophysica Acta 808, 334–342. open url image1

Mohammed GH, Binder WD, Gillies SL (1995) Chlorophyll fluorescence — a review of its practical forestry applications and instrumentation. Scandinavian Journal of Forest Research 10, 383–410. open url image1

Moise N, Moya I (2004a) Correlation between lifetime heterogeneity and kinetics heterogeneity during chlorophyll fluorescence induction in leaves: 1. Mono-frequency phase and modulation analysis reveals a conformational change of a PSII pigment complex during the IP thermal phase. Biochimica et Biophysica Acta 1657, 33–46.
PubMed |
open url image1

Moise N, Moya I (2004b) Correlation between lifetime heterogeneity and kinetics heterogeneity during chlorophyll fluorescence induction in leaves: 2. Multi-frequency phase and modulation analysis evidences a loosely connected PSII pigment–protein complex. Biochimica et Biophysica Acta 1657, 47–60.
PubMed |
open url image1

Morgan JA, Rhodes D (2002) Mathematical modelling of plant metabolic pathways. Metabolic Engineering 4, 80–89.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Morin P (1964) Études des cinétiques de fluorescence de la chlorophylle in vivo, dans lea premiers instants qui suivent le début de l’illumination. Journal of Chemical Physics 61, 674–680. open url image1

van Mourik F, Groot M-L, van Grondelle R, Dekker JP, van Stokkum IHM (2004) Global and target analysis of fluorescence measurements on photosystem 2 reaction centers upon red excitation. Physical Chemistry Chemical Physics 6, 4820–4824.
Crossref |
open url image1

Moya I, Cerovic ZG (2004) Remote sensing of chlorophyll fluorescence: instrumentation and analysis. In ‘Chlorophyll fluorescence: a signature of photosynthesis’. (Eds GC Papageorgiou,  Govindjee) pp. 429–445. (Springer: Dordrecht)

Müller MG, Niklas J, Lubitz W, Holzwarth AR (2003) Ultrafast transient absorption studies on photosystem I reaction centers from Chlamydomonas reinhardtii. 1. A new interpretation of the energy trapping and early electron transfer steps in photosystem I. Biophysical Journal 85, 3899–3922.
PubMed |
open url image1

Munday JC, Govindjee (1969a) Light-induced changes in the fluorescence yield of chlorophyll a in vivo. III. The dip and the peak in the fluorescence transient of Chlorella pyrenoidosa. Biophysical Journal 9, 1–21.
PubMed |
open url image1

Munday JC, Govindjee (1969b) Light-induced changes in the fluorescence yield of chlorophyll a in vivo. IV. The effect of preillumination on the fluorescence transient of Chlorella pyrenoidosa. Biophysical Journal , 22–35. open url image1

Nedbal L, Whitmarsh J (2004) Chlorophyll a fluorescence imaging of leaves and fruits. In ‘Chlorophyll fluorescence: a signature of photosynthesis’. (Eds GC Papageorgiou,  Govindjee) pp. 389–407. (Springer: Dordrecht)

Nedbal L, Trtílek M, Kaftan D (1999) Flash fluorescence induction: a novel method to study regulation of photosystem II. Journal of Photochemistry and Photobiology. B, Biology 48, 154–157.
Crossref | GoogleScholarGoogle Scholar | open url image1

Nedbal L, Březina V, Červený J, Trtílek M (2005) Photosynthesis in dynamic light: systems biology of unconventional chlorophyll fluorescence transients in Synechocystis sp. PCC 6803. Photosynthesis Research , 99–106.
Crossref | GoogleScholarGoogle Scholar | open url image1

Neubauer C, Schreiber U (1987) The polyphasic rice of chlorophyll fluorescence upon onset of strong continuous illumination: I. Saturation characteristics and partial control by the photosystem II acceptor side. Zeitschrift für Naturforschung 42c, 1246–1254. open url image1

Novoderezhkin VI, Andrizhiyevskaya EG, Dekker JP, van Grondelle R (2005) Pathways and timescales of primary charge separation in the photosystem II reaction center as revealed by a simultaneous fit of time-resolved fluorescence and transient absorption. Biophysical Journal 89, 1464–1481.
Crossref | PubMed |
open url image1

Oettmeier W, Soll HJ (1983) Competition between plastoquinone and 3-(3,4-dichlorphenyl)-1,1-dimethylurea at the acceptor side of photosystem II. Biochimica et Biophysica Acta 724, 287–297. open url image1

Oukarroum A, Strasser RJ (2004) Phenotyping of dark and light adapted barley plants by the fast chlorophyll a fluorescence rise OJIP. South African Journal of Botany 70, 277–283. open url image1

Owens TG (1996) Processing of excitation energy by antenna pigments. In ‘Photosynthesis and the environment’. (Ed. NR Baker) pp. 1–23. (Kluwer Academic Publishers: Dordrecht)

Oxborough K (2004a) Imaging of chlorophyll a fluorescence: theoretical and practical aspects of an emerging technique for the monitoring of photosynthetic performance. Journal of Experimental Botany 55, 1195–1205.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Oxborough K (2004) Using chlorophyll a fluorescence imaging to monitor photosynthetic performance. In ‘Chlorophyll fluorescence: a signature of photosynthesis’. (Eds GC Papageorgiou,  Govindjee) pp. 409–428. (Springer: Dordrecht)

Paddock ML, Chang C, Xu Q, Abresch EC, Axelrod HL, Feher G, Okamura MY (2005) Quinone (QB) reduction by B-branch electron transfer in mutant bacterial reaction centers from Rhodobacter sphaeroides: quantum efficiency and X-ray structure. Biochemistry 44, 6920–6928.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Paoletti E, Bussotti F, Della Rocca G, Lorenzini G, Nali C, Strasser RJ (2004) Fluorescence transient in ozonated Mediterranean shrubs. Phyton-Annales REI Botanicae 44, 121–131. open url image1

Papageorgiou GC, Govindjee (Eds) (2004) ‘Chlorophyll fluorescence: a signature of photosynthesis.’ (Eds GC Papageorgiou,  Govindjee) (Springer: Dordrecht, The Netherlands)

Parvanova D, Popova A, Zaharieva I, Lambrev P, Konstantinova T, Taneva S, Atanassov A, Goltsev V, Djilianov D (2004) Low temperature tolerance of tobacco plants transformed to accumulate proline, fructans, or glycine betaine. Variable chlorophyll fluorescence evidence. Photosynthetica 42, 179–185.
Crossref | GoogleScholarGoogle Scholar | open url image1

Pfarrherr A, Tencher K, Leupold D, Hoffmann P (1991) Chlorophyll b in solution: fluorescence lifetimes, absorption and emission spectra as criteria of purity. Journal of Photochemistry and Photobiology. B, Biology 9, 35–41.
Crossref | GoogleScholarGoogle Scholar | open url image1

Pfündel E (1998) Estimating the contribution of photosystem I to total leaf chlorophyll fluorescence. Photosynthesis Research 56, 185–195.
Crossref | GoogleScholarGoogle Scholar | open url image1

Poolman MG, Fell DA, Thomas S (2000) Modelling photosynthesis and its control. Journal of Experimental Botany 51, 319–328.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Pospíšil P, Dau H (2000) Chlorophyll fluorescence transients of photosystem II membrane particles as a tool for studying photosynthetic oxygen evolution. Photosynthesis Research 65, 41–52.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Pospíšil P, Dau H (2002) Valinomycin sensitivity proves that light-induced thylakoid voltages result in millisecond phase of chlorophyll fluorescence transients. Biochimica et Biophysica Acta 1554, 94–100.
PubMed |
open url image1

Ripley BS, Redfern SP, Dames J (2004) Ozone foliar symptoms in woody plant species assessed with ultrastructural and fluorescence analysis. South African Journal of Science 100, 615–618. open url image1

Roelofs TA, Lee C-H, Holzwarth AR (1992) Global target analysis of picosecond chlorophyll fluorescence kinetics from pea chloroplasts. A new approach to the characterization of the primary processes in photosystem II α- and β-units. Biophysical Journal 61, 1147–1163. open url image1

Roháček K (2002) Chlorophyll fluorescence parameters: the definitions, photosynthetic meaning, and mutual relationships. Photosynthetica 40, 13–29.
Crossref |
open url image1

Roháček K, Barták M (1999) Technique of the modulated chlorophyll fluorescence: basic concepts, useful parameters, and some applications. Photosynthetica 37, 339–363.
Crossref |
open url image1

Ruth B (1990) A device for determination of the microsecond component of the in vivo chlorophyll fluorescence induction kinetics. Measurement Science & Technology 1, 517–521.
Crossref | GoogleScholarGoogle Scholar | open url image1

Ruth B (1991) Measurement of the chlorophyll fluorescence induction kinetics with 10 μs time resolution and its application in the forest decline research. Radiation and Environmental Biophysics 30, 321–332.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Samson G, Bruce D (1996) Origins of the low yield of chlorophyll a fluorescence induced by single turnover flash in spinach thylakoids. Biochimica et Biophysica Acta 1276, 147–153. open url image1

Samson G, Prášil O, Yaakoubd B (1999) Photochemical and thermal phases of chlorophyll a fluorescence. Photosynthetica 37, 163–182.
Crossref | GoogleScholarGoogle Scholar | open url image1

Satoh K, Katoh S (1981) Fluorescence induction in chloroplasts isolated from the green alga, Bryopsis maxima IV. The I–D dip. Plant & Cell Physiology 22, 11–21. open url image1

Sayed OH (2003) Chlorophyll fluorescence as a tool in cereal crop research. Photosynthetica 41, 321–330.
Crossref | GoogleScholarGoogle Scholar | open url image1

Schansker G, Srivastava A, Govindjee , Strasser RJ (2003) Characterization of the 820-nm transmission signal paralleling the chlorophyll a fluorescence rise (OJIP) in pea leaves. Functional Plant Biology 30, 785–796. open url image1

Schansker G, Tóth SZ, Strasser RJ (2005) Methylviologen and dibromorhymoquinone treatments of pea leaves reveal the role of photosystem I in the Chl a fluorescence rise OJIP. Biochimica et Biophysica Acta 1706, 250–261.
PubMed |
open url image1

Schatz GH, Brock H, Holzwarth AR (1988) Kinetic and energetic model for the primary processes in photosystem II. Biophysical Journal 54, 397–405. open url image1

Schreiber U (1986) Detection of rapid induction kinetics with a new type of high-frequency modulated chlorophyll fluorometer. Photosynthesis Research 9, 261–272.
Crossref | GoogleScholarGoogle Scholar | open url image1

Schreiber U (2002) Assessment of maximal fluorescence yield: donor-side dependent quenching and QB-quenching. In ‘Plant spectrofluorometry: applications and basic research’. (Eds O van Kooten, JFH Snel) pp. 23–47. (Rozenberg Publishers: Amsterdam)

Schreiber U (2004) Pulse-amplitude-modulation (PAM) fluorometry and saturation pulse method: an overview. In ‘Chlorophyll fluorescence: a signature of photosynthesis’. (Eds GC Papageorgiou,  Govindjee) pp. 279–319. (Springer: Dordrecht)

Schreiber U, Neubauer C (1987) The polyphasic rice of chlorophyll fluorescence upon onset of strong continuous illumination: II. Partial control by the photosystem II donor side and possible ways of interpretation. Zeitschrift für Naturforschung 42c, 1255–1264. open url image1

Schreiber U, Neubauer C (1990) O2-dependent electron flow, membrane energization and the mechanism of non-photochemical quenching of chlorophyll fluorescence. Photosynthesis Research 25, 279–293.
Crossref | GoogleScholarGoogle Scholar | open url image1

Schreiber U, Krieger A (1996) Two fundamentally different types of variable chlorophyll fluorescence in vivo. FEBS Letters 397, 131–135.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Schreiber U, Bauer R, Franck UF (1971) Chlorophyll fluorescence induction in green plants at oxygen deficiency. In ‘Proceedings of the IInd international congress on photosynthesis’. (Eds G Forti, M Avron, A Melandri) pp. 169–179. (Junk: The Hague)

Schreiber U, Schliwa U, Bilger W (1986) Continuous recording of photochemical and nonphotochemical chlorophyll fluorescence quenching with a new type of modulation fluorometer. Photosynthesis Research 10, 51–62.
Crossref | GoogleScholarGoogle Scholar | open url image1

Schreiber U, Neubauer C, Klughammer C (1989) Devices and methods for room-temperature fluorescence analysis. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences 323, 241–251. open url image1

Schreiber U, Hormann H, Neubauer C, Klughammer C (1995) Assessment of photosystem II photochemical quantum yield by chlorophyll fluorescence quenching analysis. Australian Journal of Plant Physiology 22, 209–220. open url image1

Shigematsu Y, Satoh F, Yamada Y (1989) A binding model for phenylurea herbicides based on analysis of a Thr 264 mutation in D-1 protein of tobacco. Pesticide Biochemistry and Physiology 35, 33–41.
Crossref | GoogleScholarGoogle Scholar | open url image1

Shinkarev VP, Govindjee (1993) Insight into the relationship of chlorophyll a fluorescence yield to the concentration of its natural quenchers in oxygenic photosynthesis. Proceedings of the National Academy of Sciences USA 90, 7466–7469. open url image1

Sinclair TR, Purcell LC, Sneller CH (2004) Crop transformation and the challenge to increase yield potential. Trends in Plant Science 9, 70–75.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Sonneveld A, Rademaker H, Duysens LNM (1979) Chlorophyll a fluorescence as a monitor of nanosecond reduction of the photooxidized primary donor P-680+ of photosystem II. Biochimica et Biophysica Acta 548, 536–551.
PubMed |
open url image1

Srivastava A, Guissé B, Greppin H, Strasser RJ (1997) Regulation of antenna structure and electron transport in photosystem II of Pisum sativum under elevated temperature probed by the fast polyphasic chlorophyll a fluorescence transient: OKJIP. Biochimica et Biophysica Acta 1320, 95–106. open url image1

Stahl U, Tusov VB, Paschenko VZ, Voigh J (1989) Spectroscopic investigations of fluorescence behaviour, role and function of the long-wavelength pigments of photosystem I. Biochimica et Biophysica Acta 973, 198–204. open url image1

Stirbet A, Govindjee , Strasser BJ, Strasser RJ (1995) Numerical simulation of chlorophyll a fluorescence induction in plants. In ‘Photosynthesis: from light to biosphere. Vol. II’. (Ed. P Mathis) pp. 919–922. (Kluwer Academic Publishers: Dordrecht)

Stirbet A, Govindjee , Strasser BJ, Strasser RJ (1998) Chlorophyll a fluorescence induction in higher plants: modelling and numerical simulation. Journal of Theoretical Biology 193, 131–151.
Crossref | GoogleScholarGoogle Scholar | open url image1

Stirbet A, Strasser RJ (1995a) Numerical simulation of the fluorescence induction in plants. Archives des Sciences Genéve 48, 41–60. open url image1

Stirbet A, Strasser RJ (1995) Numerical simulation of the in vivo fluorescence in plants. In ‘First international symposium on mathematical modelling and simulation in agriculture and bio-industries. Vol. 1’. (Free University of Brussels: Brussels)


Stirbet A, Strasser RJ (2001) The possible role of pheophytine in the fast fluorescence rise OKJIP. In ‘Proceedings of the 12th international congress on photosynthesis. [CD-ROM]’. (CSIRO Publishing: Melbourne)


Strasser BJ (1997) Donor side capacity of photosystem II probed by chlorophyll a fluorescence transients. Photosynthesis Research 52, 147–155.
Crossref | GoogleScholarGoogle Scholar | open url image1

Strasser RJ, Butler WL (1977) Yield of energy transfer and spectral distribution of excitation energy in photochemical apparatus of flashed bean leaves. Biochimica et Biophysica Acta 462, 295–306.
PubMed |
open url image1

Strasser RJ, Govindjee (1991) The F0 and the O–J–I–P fluorescence rise in higher plants and algae. In ‘Regulation of chloroplast biogenesis’. (Ed. JH Argyroudi-Akoyunoglou) pp. 423–426. (Plenum Press: New York)

Strasser RJ, Govindjee (1992) On the O–J–I–P fluorescence transient in leaves and D1 mutants of Chlamydomonas reinhardtii. In ‘Research in photosynthesis. Vol. 2’. (Ed. M Murata) pp. 29–32. (Kluwer Academic Publishers: Dordrecht)

Strasser RJ, Strasser BJ (1995) Measuring fast fluorescence transients to address environmental questions: the JIP test. In ‘Photosynthesis: from light to biosphere. Vol. V’. (Ed. P Mathis) pp. 977–980. (Kluwer Academic Publishers: Dordrecht)

Strasser RJ, Stirbet A (1997) Influence of photosystem II heterogeneity on the simulated Chl a fluorescence induction transients. In ‘Proceeding of the second international symposium on mathematical modelling simulation in agriculture bio-industries’. (Ed. I Farkas ) pp. 21–26. (Gödöllö University of Agricultural Sciences: Budapest)


Strasser RJ, Stirbet AD (2001) Estimation of the energetic connectivity of PS II centres in plants using the fluorescence rise O–J–I–P. Fitting of experimental data to three different PS II models. Mathematics and Computers in Simulation 56, 451–461.
Crossref | GoogleScholarGoogle Scholar | open url image1

Strasser RJ, Srivastava A, Govindjee (1995) Polyphasic chlorophyll a fluorescence transient in plants and cyanobacteria. Photochemistry and Photobiology 61, 32–42. open url image1

Strasser RJ, Schansker G, Srivastava A, Govindjee (2001) Simultaneous measurement of photosystem I and photosystem II probed by modulated transmission at 820 nm and by chlorophyll a fluorescence in the sub ms to second time range. In ‘Proceedings of the 12th international congress on photosynthesis. [CD-ROM]’. (CSIRO Publishing: Melbourne)


Strasser RJ, Tsimilli-Michael M, Srivastava A (2004) Analysis of chlorophyll a fluorescence transient. In ‘Chlorophyll fluorescence: a signature of photosynthesis’. (Eds GC Papageorgiou, ,  Govindjee) pp. 321–362. (Springer: Dordrecht)

Sušila P, Lazár D, Ilík P, Tomek P, Nauš J (2004) The gradient of exciting radiation within a sample affects relative heights of steps in the fast chlorophyll a fluorescence rise. Photosynthetica 42, 161–172.
Crossref | GoogleScholarGoogle Scholar | open url image1

Tomek P, Lazár D, Ilík P, Nauš J (2001) On the intermediate steps between the O and P steps in chlorophyll a fluorescence rise measured at different intensities of exciting light. Australian Journal of Plant Physiology 28, 1151–1160. open url image1

Tomek P, Ilík P, Lazár D, Štroch M, Nauš J (2003) On the determination of QB-non-reducing photosystem II centers from chlorophyll a fluorescence induction. Plant Science 164, 665–670.
Crossref | GoogleScholarGoogle Scholar | open url image1

Tóth SZ, Schansker G, Strasser RJ (2005) In intact leaves, the maximum fluorescence level (F M) is independent of the redox state of the plastoquinone pool: a DCMU-inhibition study. Biochimica et Biophysica Acta 1708, 275–282.
PubMed |
open url image1

Trebst A (1987) The three-dimensional structure of the herbicide binding niche on the reaction centre polypeptides of photosystem II. Zeitschrift für Naturforschung 42c, 742–750. open url image1

Trebst A, Draber W (1986) Inhibitors of photosystem II and the topology of the herbicide and QB binding polypeptide in the thylakoid membrane. Photosynthesis Research 10, 381–392.
Crossref | GoogleScholarGoogle Scholar | open url image1

Trissl H-W, Gao Y, Wulf K (1993) Theoretical fluorescence induction curves derived from coupled differential equations describing the primary photochemistry of photosystem II by an exciton-radical pair equilibrium. Biophysical Journal 64, 974–988. open url image1

Tsimilli-Michael M, Pêcheux M, Strasser RJ (1998) Biomonitoring of coral reef and temperate foraminifers by the Chl a fluorescence rise O–J–I–P of their symbionts. In ‘Photosynthesis: mechanisms and effects. Vol. 5’. (Ed. G Garab) pp. 4113–4116. (Kluwer Academic Publishers: Dordrecht)

Tsimilli-Michael M, Pêcheux M, Strasser RJ (1998b) Vitality and stress adaptation of the symbionts of coral reef and temperature foraminifers probed in hospite by the fluorescence kinetics OJIP. Archives des Sciences Genéve 51, 205–240. open url image1

Tyystjärvi E, Vass I (2004) Light emission as a probe of charge separation and recombination in the photosynthetic apparatus: relation of prompt fluorescence to delayed light emission and thermoluminescence. In ‘Chlorophyll fluorescence: a signature of photosynthesis’. (Eds GC Papageorgiou,  Govindjee) pp. 363–388. (Springer: Dordrecht)

Tyystjärvi E, Koski A, Keränen M, Nevalainen O (1999) The Kautsky curve is a built-in barcode. Biophysical Journal 77, 1159–1167.
PubMed |
open url image1

van Grondelle R (1985) Excitation energy transfer, trapping and annihilation in photosynthetic systems. Biochimica et Biophysica Acta 811, 147–195. open url image1

Vasil’ev S, Bruce D (1998) Nonphotochemical quenching of excitation energy in photosystem II. A picosecond time-resolved study of the low yield of chlorophyll a fluorescence induced by single-turnover flash in isolated spinach thylakoids. Biochemistry 37, 11046–11054.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Velthuys BR (1981) Electron dependent competition between plastoquinone and inhibitors for binding to Photosystem II. FEBS Letters 126, 272–276.
Crossref | GoogleScholarGoogle Scholar | open url image1

Velthuys BR, Amesz J (1974) Charge accumulation at the reducing side of system 2 of photosynthesis. Biochimica et Biophysica Acta 333, 85–94. open url image1

Vernotte C, Etienne A-L, Briantais L-M (1979) Quenching of the system II chlorophyll fluorescence by the plastoquinone pool. Biochimica et Biophysica Acta 545, 519–527.
PubMed |
open url image1

Visser D, Heijnen J (2002) The mathematics of metabolic control analysis revisited. Metabolic Engineering 4, 114–123.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Vredenberg WJ (2000) A three-state model for energy trapping and chlorophyll fluorescence in photosystem II incorporating radical pair recombination. Biophysical Journal 79, 26–38.
PubMed |
open url image1

Vredenberg WJ (2004) System analysis and photoelectrochemical control of chlorophyll fluorescence in terms of trapping models of photosystem II: a challenging view. In ‘Chlorophyll fluorescence: a signature of photosynthesis’. (Eds GC Papageorgiou,  Govindjee) pp. 133–172. (Springer: Dordrecht)

Vredenberg WJ, Bulychev A (2002) Photo-electrochemical control of photosystem II chlorophyll fluorescence in vivo. Bioelectrochemistry 57, 123–128.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Vredenberg WJ, Bulychev A (2003) Photoelectric effects on chlorophyll fluorescence of photosystem II in vivo. Kinetics in the absence and presence of valinomycin. Bioelectrochemistry 60, 87–95.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Vredenberg WJ, van Rensen JJS, Rodrigues GC (2005) On the sub-maximal yield and photo-electric stimulation of chlorophyll a fluorescence in single turnover excitations in plant cells. Bioelectrochemistry (Amsterdam, Netherlands) 68, 83–90. open url image1

Wakeham MC, Breton J, Nabedryk E, Jones MR (2004) Formation of a semiquinone at the QB site by A- or B-branch electron transfer in the reaction center from Rhodobacter sphaeroides.  Biochemistry 43, 4755–4763.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Weber G, Teale FWJ (1957) Determination of the absolute quantum yield of fluorescent solutions. Transactions of the Faraday Society 53, 646–655.
Crossref | GoogleScholarGoogle Scholar | open url image1

Whitmarsh J, Ort DR (1984) Stoichiometries of electron transport complexes in spinach chloroplasts. Archives of Biochemistry and Biophysics 231, 378–389.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Wong D, Govindjee (1979) Antagonistic effects of mono- and divalent cations on polarization of chlorophyll fluorescence in thylakoids and changes in excitation energy transfer. FEBS Letters 97, 373–377.
Crossref | GoogleScholarGoogle Scholar | open url image1

Xia JR, Li YJ, Zou DH (2004) Effects of salinity stress on PSII in Ulva lactuca as probed by chlorophyll fluorescence measurements. Aquatic Botany 80, 129–137.
Crossref | GoogleScholarGoogle Scholar | open url image1

Yaakoubd B, Andersen R, Desjardins Y, Samson G (2002) Contribution of the free oxidized and QB-bound plastoquinone molecules to the thermal phase of chlorophyll-a fluorescence. Photosynthesis Research 74, 251–257.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Zaharieva I, Goltsev V (2003) Advances on photosystem II investigation by measurement of delayed chlorophyll fluorescence by a phosphoroscopic method. Photochemistry and Photobiology 77, 292–298.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1

Zhu X-G, Govindjee , Baker NR, deSturler E, Ort DR, Long SP (2005) Chlorophyll a fluorescence induction kinetics in leaves predicted from a model describing each discrete step of excitation energy and electron transfer associated with photosystem II. Planta in press , open url image1

Zouni A, Witt HT, Kern J, Fromme P, Krauß N, Saenger W, Orth P (2001) Crystal structure of photosystem II from Synechococcus elongatus at 3.8 Å resolution. Nature 409, 739–743.
Crossref | GoogleScholarGoogle Scholar | PubMed | open url image1