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Australian Systematic Botany Australian Systematic Botany Society
Taxonomy, biogeography and evolution of plants
RESEARCH ARTICLE (Open Access)

Morphological and molecular evidence refute a broad circumscription for Pultenaea glabra (Fabaceae: Mirbelieae), with implications for taxonomy, biogeography, and conservation

Matthew A. M. Renner https://orcid.org/0000-0003-2286-7257 A C , Russell L. Barrett https://orcid.org/0000-0003-0360-8321 A * , Steve Clarke B , James A. R. Clugston https://orcid.org/0000-0002-3653-6953 A , Trevor C. Wilson https://orcid.org/0000-0002-9026-0521 A and Peter H. Weston A
+ Author Affiliations
- Author Affiliations

A National Herbarium of New South Wales, Royal Botanic Gardens and Domain Trust, Australian Botanic Garden, Locked Bag 6002, Mount Annan, NSW 2567, Australia.

B Blaxland East, Blue Mountains, NSW 2774, Australia.

C Present address: Wildland Consultants, 99 Sala Street, Te Ngae, Rotorua, New Zealand.


Handling Editor: Daniel Murphy

Australian Systematic Botany 35(3) 225-277 https://doi.org/10.1071/SB21030
Submitted: 6 August 2021  Accepted: 23 May 2022   Published: 14 July 2022

© 2022 The Author(s) (or their employer(s)). Published by CSIRO Publishing. This is an open access article distributed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (CC BY-NC-ND)

Abstract

Morphological and single-nucleotide polymorphism data support splitting Pultenaea glabra Benth. into eight species, including one in Victoria, and seven in eastern and northern New South Wales. Six species are newly described, five of which are, like P. glabra, narrow-range endemics within the Greater Blue Mountains World Heritage Area and adjacent sandstone landforms of the Great Dividing Range. The recognition of six new species from what was broadly P. glabra has implications for conservation management, including for P. glabra itself, which has a smaller distribution and more precise habitat requirements than previously thought. One of the new species, P. percussa, is known by a single 1971 gathering only. The occurrence of several narrow-range Blue Mountains endemic Pultenaea species may be explained by the combination of edaphic diversity and topographic complexity, which could act in concert to promote divergences among small, allopatric populations. Hybrids between P. glabra and P. flexilis Sm. are documented for the first time; however, limited evidence for introgression between the two species was observed. The following new taxa are described: Pultenaea aculeata M.A.M.Renner, P.H.Weston & S.Clarke, Pultenaea percussa M.A.M.Renner & P.H.Weston, Pultenaea furcata M.A.M.Renner & R.L.Barrett, Pultenaea mutabilis M.A.M.Renner & P.H.Weston, Pultenaea mutabilis var. angusta M.A.M.Renner, P.H.Weston, & S.Clarke, Pultenaea praecipua M.A.M.Renner & P.H.Weston, Pultenaea praecipua subsp. temperata M.A.M.Renner & R.L.Barrett, and Pultenaea tenebrosa M.A.M.Renner, P.H.Weston & S.Clarke. Lectotypes are designated for Pultenaea villosa var. glabrescens Benth. and Pultenaea weindorferi Reader.

Keywords: Australia, New South Wales, plant taxonomy, rare species, sandstone flora, short-range endemics, speciation, systematics, Victoria.


References

Barrett RL, Clugston JAR, Cook LG, Crisp MD, Jobson PC, Lepschi BJ, Renner MAM, Weston PH (2021) Understanding diversity and systematic in Australian Fabaceae tribe Mirbelieae. Diversity 13, 391
Understanding diversity and systematic in Australian Fabaceae tribe Mirbelieae.Crossref | GoogleScholarGoogle Scholar |

Binks RM, Wilkins CF, Markey AS, Lyons MN, Byrne M (2020) Genomic data and morphological re-assessment reveals synonymy and hybridisation among Seringia taxa (Lasiopetaleae, Malvaceae) in remote north-western Australia. Taxon 69, 307–320.
Genomic data and morphological re-assessment reveals synonymy and hybridisation among Seringia taxa (Lasiopetaleae, Malvaceae) in remote north-western Australia.Crossref | GoogleScholarGoogle Scholar |

Bryant D, Moulton V (2004) Neighbor-net: an agglomerative method for the construction of phylogenetic networks. Molecular Biology and Evolution 21, 255–265.
Neighbor-net: an agglomerative method for the construction of phylogenetic networks.Crossref | GoogleScholarGoogle Scholar | 14660700PubMed |

Buchmann R, Hazelhurst S (2014) Genesis Manual. (University of the Witwatersrand: Johannesburg, South Africa) Available at http://www.bioinf.wits.ac.za/software/genesis/Genesis.pdf

Coates D, Byrne M, Moritz C (2018) Genetic diversity and conservation units: dealing with the species-population continuum in the age of genomics. Frontiers in Ecology and Evolution 6, 165
Genetic diversity and conservation units: dealing with the species-population continuum in the age of genomics.Crossref | GoogleScholarGoogle Scholar |

Corrick MG (1996). Pultenaea. In ‘Flora of Victoria Vol. 3, Dicotyledons Winteraceae to Myrtaceae’. (Eds NG Walsh, TJ Entwisle) pp. 765–793. (Inkata Press: Melbourne, Vic., Australia)

de Kok RPJ, West JG (2002) A revision of Pultenaea (Fabaceae) 1. Species with ovaries glabrous and/or with tufted hairs. Australian Systematic Botany 15, 81–133.
A revision of Pultenaea (Fabaceae) 1. Species with ovaries glabrous and/or with tufted hairs.Crossref | GoogleScholarGoogle Scholar |

de Kok RPJ, West JG (2003) A revision of Pultenaea (Fabaceae) 2. Eastern Australian species with velutinous ovaries and incurved leaves. Australian Systematic Botany 16, 229–273.
A revision of Pultenaea (Fabaceae) 2. Eastern Australian species with velutinous ovaries and incurved leaves.Crossref | GoogleScholarGoogle Scholar |

de Kok RPJ, West JG (2004) A revision of Pultenaea (Fabaceae) 3. The eastern species with recurved leaves. Australian Systematic Botany 17, 273–326.
A revision of Pultenaea (Fabaceae) 3. The eastern species with recurved leaves.Crossref | GoogleScholarGoogle Scholar |

de Queiroz K (1998) The general lineage concept of species, species criteria, and the process of speciation. In ‘Forms: Species and Speciation’. (Eds DJ Howard, SH Berlocher) pp. 57–75. (Oxford University Press: New York, NY, USA)

de Queiroz K (2007) Species concepts and species delimitation. Systematic Biology 56, 879–886.
Species concepts and species delimitation.Crossref | GoogleScholarGoogle Scholar | 18027281PubMed |

Department of Environment and Conservation (2006) The Vegetation of the Western Blue Mountains including the Capertee, Coxs, Jenolan & Gurnang Areas. Volume 1: Technical Report (Final V1.1). (Hawkesbury–Nepean Catchment Management Authority, DEC: Sydney, NSW, Australia) Available at https://www.environment.nsw.gov.au/resources/nature/vegofwbluemtsvol1tech.pdf

Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulations study. Molecular Ecology 14, 2611–2620.
Detecting the number of clusters of individuals using the software STRUCTURE: a simulations study.Crossref | GoogleScholarGoogle Scholar | 15969739PubMed |

Goldbery R (1972) Geology of the western Blue Mountains. Geological Survey of New South Wales Bulletin 20, 1–172.

Goldbery R, Holland WN (1973) Stratigraphy and sedimentation of redbed facies in Narrabeen Group of Sydney Basin Australia. American Association of Petroleum Geologists Bulletin 57, 1314–1334.

Gruber B, Unmack PJ, Berry OF, Georges A (2018) dartR: an R package to facilitate analysis of SNP data generated from reduced representation genome sequencing. Molecular Ecology Resources 18, 691–699.
dartR: an R package to facilitate analysis of SNP data generated from reduced representation genome sequencing.Crossref | GoogleScholarGoogle Scholar | 29266847PubMed |

Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O (2010) New algorithms and methods to estimate maximul-likelihood phylogenies: assessing the performance of PhyML 3.0. Systematic Biology 59, 307–321.
New algorithms and methods to estimate maximul-likelihood phylogenies: assessing the performance of PhyML 3.0.Crossref | GoogleScholarGoogle Scholar | 20525638PubMed |

Hager T, Benson D (2010) The eucalypts of the Greater Blue Mountains World Heritage Area: distribution, classification and habitats of the species of Eucalyptus, Angophora and Corymbia (family Myrtaceae) recorded in its eight conservation reserves. Cunninghamia 11, 425–444.

Harden GJ (2002) Fabaceae [family description]. In ‘Flora of New South Wales. Vol. 2’, 2nd edn. (Ed. GJ Harden) p. 363. (New South Wales University Press: Sydney, NSW, Australia)

Herbert C (1997) Sequence stratigraphic analysis of Early and Middle Triassic alluvial and estuarine facies in the Sydney Basin, Australia. Australian Journal of Earth Sciences 44, 125–143.
Sequence stratigraphic analysis of Early and Middle Triassic alluvial and estuarine facies in the Sydney Basin, Australia.Crossref | GoogleScholarGoogle Scholar |

Hoang DT, Chernomor O, von Haeseler A, Minh BQ, Vinh LS (2018) UFBoot2: Improving the ultrafast bootstrap approximation. Molecular Biology and Evolution 35, 518–522.
UFBoot2: Improving the ultrafast bootstrap approximation.Crossref | GoogleScholarGoogle Scholar | 29077904PubMed |

Huson DH, Bryant D (2006) Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution 23, 254–267.
Application of phylogenetic networks in evolutionary studies.Crossref | GoogleScholarGoogle Scholar | 16221896PubMed |

IUCN (2012) ‘IUCN Red List Categories and Criteria: Version 3.1’, 2nd edn. (IUCN: Gland, Switzerland; and Cambridge, UK)

Johnson LA, Cairns-Heath H (2010) Decryptic cryptic species: morphological and molecular evidence for recognizing Navarretia linearifolia as distinct from N. sinistra (Polemoniaceae). Systematic Botany 35, 618–628.
Decryptic cryptic species: morphological and molecular evidence for recognizing Navarretia linearifolia as distinct from N. sinistra (Polemoniaceae).Crossref | GoogleScholarGoogle Scholar |

Jombart T (2008) adegenet: an R package for the multivariate analysis of genetic markers. Bioinformatics 24, 1403–1405.
adegenet: an R package for the multivariate analysis of genetic markers.Crossref | GoogleScholarGoogle Scholar | 18397895PubMed |

Kalyaanamoorthy S, Minh BQ, Wong TKF, von Haeseler A, Jermiin LS (2017) ModelFinder: fast model selection for accurate phylogenetic estimates. Nature Methods 14, 587–589.
ModelFinder: fast model selection for accurate phylogenetic estimates.Crossref | GoogleScholarGoogle Scholar | 28481363PubMed |

Killan A, Wenzl P, Huttner E, Carling J, Xia L, Blois H, Caig V, Heller-Uszynska K, Jaccoud D, Hopper C, Aschenbrenner-Kilian M, Evers M, Peng K, Cayla C, Hok P, Uszynski G (2012) Diversity Arrays technology: a generic genome profiling technology on open platforms. In ‘Data production and analysis in population genomics: methods and protocols’. (Eds F Pompanon, A Bonin) pp 67–89. (Humana Press: New York, NY, USA)

Lischer HEL, Excoffier L (2012) PGDSpider: An automated data conversion tool for connecting population genetics and genomics programs. Bioinformatics 28, 298–299.
PGDSpider: An automated data conversion tool for connecting population genetics and genomics programs.Crossref | GoogleScholarGoogle Scholar |

Martyn J (2018) ‘Rocks and trees: a photographic journey through the rich and varied geology, scenery and flora of the Sydney region.’ (STEP Inc.: Sydney, NSW, Australia)

Maslin BR (2001) Introduction to Acacia. Flora of Australia 11A, 3–13.

Mayne SJ, Nicholas E, Bigg-Wither AL, Rasidi JS, Raine MJ (1974) ‘Geology of the Sydney Basin: a review. Bulletin 149.’ (Department of Minerals and Energy: Canberra, ACT, Australia)

Melville J, Haines ML, Boysen K, Hodkinson L, Kilian A, Smith Date KL, Potvin DA, Parris KM (2017) Identifying hybridization and admixture using SNPs: application of the DArTseq platform in phylogeographic research on vertebrates. Royal Society Open Science 4, 161061
Identifying hybridization and admixture using SNPs: application of the DArTseq platform in phylogeographic research on vertebrates.Crossref | GoogleScholarGoogle Scholar | 28791133PubMed |

Millar MA, Byrne M (2013) Cryptic divergent lineages of Pultenaea pauciflora M.B.Scott (Fabaceae: Mirbelieae) exhibit different evolutionary history. Biological Journal of the Linnean Society. Linnean Society of London 108, 871–881.
Cryptic divergent lineages of Pultenaea pauciflora M.B.Scott (Fabaceae: Mirbelieae) exhibit different evolutionary history.Crossref | GoogleScholarGoogle Scholar |

Nguyen L-T, Schmidt HA, von Haeseler A, Minh BQ (2015) IQ-TREE: a fast and effective stochastic algorithm for estimating maximum likelihood phylogenies. Molecular Biology and Evolution 32, 268–274.
IQ-TREE: a fast and effective stochastic algorithm for estimating maximum likelihood phylogenies.Crossref | GoogleScholarGoogle Scholar | 25371430PubMed |

Orthia LA, Crist MD, Cook LG, de Kok RPJ (2005a) Bush peas: a rapid radiation with no support for monophyly of Pultenaea (Fabaceae: Mirbelieae). Australian Systematic Botany 18, 133–147.
Bush peas: a rapid radiation with no support for monophyly of Pultenaea (Fabaceae: Mirbelieae).Crossref | GoogleScholarGoogle Scholar |

Orthia LA, Cook LG, Crisp MD (2005b) Generic delimitation and phylogenetic uncertainty: an example from a group that has undergone an explosive radiation. Australian Systematic Botany 18, 41–47.
Generic delimitation and phylogenetic uncertainty: an example from a group that has undergone an explosive radiation.Crossref | GoogleScholarGoogle Scholar |

Pritchard JK, Stephens M, Rosenberg NA, Donnelly P (2000) Association mapping in structured populations. American Journal of Human Genetics 67, 170–181.
Association mapping in structured populations.Crossref | GoogleScholarGoogle Scholar | 10827107PubMed |

Reader FM (1905) Contributions to the Flora of Victoria. No. 14. Victorian Naturalist 22, 51

Rutherford S, Rossetto M, Bragg JG, McPherson H, Benson D, Bonser SP, Wilson PG (2018) Speciation in the presence of gene flow: population genomics of closely related and diverging Eucalyptus species. Heredity 121, 126–141.
Speciation in the presence of gene flow: population genomics of closely related and diverging Eucalyptus species.Crossref | GoogleScholarGoogle Scholar | 29632325PubMed |

Sansaloni CP, Petroli CD, Carling J, Hudson CJ, Steane DA, Myburg AA, Grattapaglia D, Vaillancourt RE, Kilian A (2010) A high-density Diversity Arrays Technology (DArT) microarray for genome-wide genotyping in Eucalyptus. Plant Methods 6, 16
A high-density Diversity Arrays Technology (DArT) microarray for genome-wide genotyping in Eucalyptus.Crossref | GoogleScholarGoogle Scholar | 20587069PubMed |

Wang J (2017) The computer program structure for assigning individuals to populations: easy to use but easier to misuse. Molecular Ecology Resources 17, 981–990.
The computer program structure for assigning individuals to populations: easy to use but easier to misuse.Crossref | GoogleScholarGoogle Scholar | 28028941PubMed |

Weston PH (1991) Pultenaea. In ‘Flora of New South Wales, Vol. 2’. (Ed. GJ Harden) pp 481–497. (New South Wales University Press: Sydney, NSW, Australia)

Wiley EO (1978) The evolutionary species concept reconsidered. Systematic Biology 27, 17–26.