Occupancy dynamics of wild rabbits (Oryctolagus cuniculus) in the coastal dunes of the Netherlands with imperfect detection
A. J. van Strien A B E , J. J. A. Dekker C , M. Straver A , T. van der Meij A , L. L. Soldaat A , A. Ehrenburg D and E. van Loon BA Statistics Netherlands, PO Box 24500, 2490 HA The Hague, The Netherlands.
B Institute for Biodiversity and Ecosystem Dynamics, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands.
C Dutch Mammal Society, PO Box 6531 6503 GA Nijmegen, The Netherlands.
D Waternet, PO Box 94370, 1090 GJ Amsterdam, The Netherlands.
E Corresponding author. Email: asin@cbs.nl
Wildlife Research 38(8) 717-725 https://doi.org/10.1071/WR11050
Submitted: 17 March 2011 Accepted: 16 August 2011 Published: 5 December 2011
Abstract
Context: Wild rabbits are considered a key species in the coastal dunes of the Netherlands, but populations have collapsed as a result of viral diseases.
Aim: We studied to what extent population collapse led to local extinction and whether recolonisation of empty patches in the dunes happened.
Methods: We investigated occupancy dynamics using data of 245 transects where rabbits were surveyed in 1984–2009. Dynamic site-occupancy models were used to analyse the data. These models adjust for imperfect detection to avoid bias in occupancy-trend estimation.
Key results: The decline of the rabbit population has resulted in many local extinctions, especially in woodland and in the northern part of the coastal dunes. Most transects along grassland and mixed vegetation have recently been reoccupied. The recovery of woodland occupancy is slow, probably not because of limited dispersal capacity of rabbits, but because the quality of woodland habitats is poor. Detection probability of rabbits varied considerably over the years and among habitat types, indicating the necessity of taking detection into account. Rabbits were slightly better detected when it was cloudy, windy and rainy and when lunar phase approached new moon.
Conclusion: Extinction and recolonisation of habitat patches varied considerably among habitat types.
Implications: The current slow recolonisation hampers the recovery of rabbit populations in woodland habitats in the Dutch coastal dunes. Furthermore, monitoring rabbit occupancy should take imperfect detection into account to avoid biased results.
Additional keywords: binomial mixture model, colonisation, persistence, rabbit haemorrhagic disease, site-occupancy model.
References
Ballinger, A., and Morgan, D. G. (2002). Validating two methods for monitoring population size of the European rabbit (Oryctolagus cuniculus). Wildlife Research 29, 431–437.| Validating two methods for monitoring population size of the European rabbit (Oryctolagus cuniculus).Crossref | GoogleScholarGoogle Scholar |
Bankert, D., in ‘t Groen, K. C. G., and van Wieren, S. E. (2003). A review of the transect method by comparing it with three other counting methods to estimate rabbit (Oryctolagus cuniculus) density. Lutra 46, 27–34.
Bas, Y., Devictor, V., Moussus, J. P., and Jiguet, F. (2008). Accounting for weather and time-of-day parameters when analysing count data from monitoring programs. Biodiversity and Conservation 17, 3403–3416.
| Accounting for weather and time-of-day parameters when analysing count data from monitoring programs.Crossref | GoogleScholarGoogle Scholar |
Bijlsma, R. G. (2004). Long-term trends of rabbits Oryctolagus cuniculus on Pleistocene sands in the central and northern Netherlands. Lutra 47, 3–20.
Bravo, L. G., Belliure, J., and Rebollo, S. (2009). European rabbits as ecosystem engineers: warrens increase lizard density and diversity. Biodiversity and Conservation 18, 869–885.
| European rabbits as ecosystem engineers: warrens increase lizard density and diversity.Crossref | GoogleScholarGoogle Scholar |
Calvete, C. (2006). Modeling the effect of population dynamics on the impact of rabbit hemorrhagic disease. Conservation Biology 20, 1232–1241.
| Modeling the effect of population dynamics on the impact of rabbit hemorrhagic disease.Crossref | GoogleScholarGoogle Scholar |
Dekker, J. J. A. (2007). Rabbits, refuges and resources. How foraging of herbivores is affected by living in burrows. Ph.D. Thesis, Wageningen University, Wageningen, The Netherlands.
Dekker, J. J. A., Groeneveld, M., and van Wieren, S. E. (2006). No effects of dominance rank or sex on spatial behaviour of rabbits. Lutra 49, 59–66.
Delibes-Mateos, M., Redpath, S. M., Angulo, E., Ferreras, P., and Villafuerte, R. (2007). Rabbits as a keystone species in southern Europe. Biological Conservation 137, 149–156.
| Rabbits as a keystone species in southern Europe.Crossref | GoogleScholarGoogle Scholar |
Delibes-Mateos, M., Delibes, M., Ferreras, P., and Villafuerte, R. (2008). Key role of European rabbits in the conservation of the Western Mediterranean Basin Hotspot. Conservation Biology 22, 1106–1117.
| Key role of European rabbits in the conservation of the Western Mediterranean Basin Hotspot.Crossref | GoogleScholarGoogle Scholar |
Drees, J. M., Dekker, J. J. A., Wester, L., and Olff, H. (2009). The translocation of rabbits in a sand dune habitat: survival, dispersal and predation in relation to food quality and the use of burrows. Lutra 52, 109–122.
Fletcher, D. J., Moller, H., and Clapperton, B. K. (1999). Spotlight counts for assessing abundance of rabbits (Oryctolagus cuniculus L.). Wildlife Research 26, 609–620.
| Spotlight counts for assessing abundance of rabbits (Oryctolagus cuniculus L.).Crossref | GoogleScholarGoogle Scholar |
Henning, J., Pfeiffer, D. U., Davies, P. R., Meers, J., and Morris, R. S. (2006). Temporal dynamics of rabbit haemorrhagic disease virus infection in a low-density population of wild rabbits (Oryctolagus cuniculus) in New Zealand. Wildlife Research 33, 293–303.
| Temporal dynamics of rabbit haemorrhagic disease virus infection in a low-density population of wild rabbits (Oryctolagus cuniculus) in New Zealand.Crossref | GoogleScholarGoogle Scholar |
Isermann, M., Koehler, H., and Mühl, M. (2010). Interactive effects of rabbit grazing and environmental factors on plant species-richness on dunes of Norderney. Journal of Coastal Conservation 14, 103–114.
| Interactive effects of rabbit grazing and environmental factors on plant species-richness on dunes of Norderney.Crossref | GoogleScholarGoogle Scholar |
Kéry, M. (2010). ‘Introduction to WinBUGS for Ecologists. A Bayesian Approach to Regression, ANOVA, Mixed Models and Related Analyses.’ (Academic Press: Amsterdam.)
Kéry, M., Dorazio, R. M., Soldaat, L., van Strien, A., Zuiderwijk, A., and Royle, J. A. (2009). Trend estimation in populations with imperfect detection. Journal of Applied Ecology 46, 1163–1172.
| Trend estimation in populations with imperfect detection.Crossref | GoogleScholarGoogle Scholar |
Kolb, H. H. (1992). The effect of moonlight on activity in the wild rabbit (Oryctolagus cuniculus). Journal of Zoology 228, 661–665.
| The effect of moonlight on activity in the wild rabbit (Oryctolagus cuniculus).Crossref | GoogleScholarGoogle Scholar |
Kooijman, A. M., and Besse, M. (2002). On the higher availability of N and P in lime-poor than in lime-rich coastal dunes in the Netherlands. Journal of Ecology 90, 394–403.
| On the higher availability of N and P in lime-poor than in lime-rich coastal dunes in the Netherlands.Crossref | GoogleScholarGoogle Scholar | 1:CAS:528:DC%2BD38XjslKitrw%3D&md5=7ba33f8f89bf0958ccd51b212f8b3d73CAS |
Lees, A. C., and Bell, D. J. (2008). A conservation paradox for the 21st century: the European wild rabbit Oryctolagus cuniculus, an invasive alien and an endangered native. Mammal Review 38, 304–320.
| A conservation paradox for the 21st century: the European wild rabbit Oryctolagus cuniculus, an invasive alien and an endangered native.Crossref | GoogleScholarGoogle Scholar |
MacKenzie, D. I., Nichols, J. D., Royle, J. A., Pollock, K. H., Hines, J. E., and Bailey, L. L. (2006). ‘Occupancy Estimation and Modeling: Inferring Patterns and Dynamics of Species Occurrence.’ (Elsevier: San Diego, CA.)
Martin, J., Royle, J. A., MacKenzie, D. I., Edwards, H. E., Kéry, M., and Gardner, B. (2011). Accounting for non-independent detection when estimating abundance of organisms with a Bayesian approach. Methods in Ecology and Evolution. , .
| Accounting for non-independent detection when estimating abundance of organisms with a Bayesian approach.Crossref | GoogleScholarGoogle Scholar |
McCullagh, P., and Nelder, J. A. (1989). ‘Generalized Linear Models’. 2nd edn. (Chapman and Hall/CRC: London.)
Pannekoek, J., and van Strien, A. J. (2001). ‘TRIM 3 manual. Trends and Indices for Monitoring Data.’ (CBS (Statistics Netherlands): Voorburg, The Netherlands.). Available at www.ebcc.info [accessed 7 November 2011]
Plummer, M. (2009). ‘JAGS Version 1.0.3. Manual.’ Available at http://sourceforge.net/projects/mcmc-jags/ [accessed 7 November 2011]
Royle, J. A. (2004). N-mixture models for estimating population size from spatially replicated counts. Biometrics 60, 108–115.
| N-mixture models for estimating population size from spatially replicated counts.Crossref | GoogleScholarGoogle Scholar |
Royle, J. A., and Dorazio, R. M. (2008). ‘Hierarchical Modeling and Inference in Ecology.’ (Academic Press: Amsterdam.)
Royle, J. A., and Kéry, M. (2007). A Bayesian state-space formulation of dynamic occupancy models. Ecology 88, 1813–1823.
| A Bayesian state-space formulation of dynamic occupancy models.Crossref | GoogleScholarGoogle Scholar |
Royle, J. A., and Nichols, J. D. (2003). Estimating abundance from repeated presence-absence data or point counts. Ecology 84, 777–790.
| Estimating abundance from repeated presence-absence data or point counts.Crossref | GoogleScholarGoogle Scholar |
Sergio, F., and Newton, I. (2003). Occupancy as a measure of territory quality. Journal of Animal Ecology 72, 857–865.
| Occupancy as a measure of territory quality.Crossref | GoogleScholarGoogle Scholar |
Smith, A., and Boyer, A. (2006). Oryctolagus cuniculus. In’ IUCN 2010. IUCN Red List of Threatened Species. Version 2010.4.’ Available at www.iucnredlist.org [accessed 1 December 2010].
Trout, R. C., Ross, J., Tittensor, A. M., and Fox, A. P. (1992). The effect on a British wild rabbit population (Oryctolagus cuniculus) of manipulating myxomatosis. Journal of Applied Ecology 29, 679–686.
| The effect on a British wild rabbit population (Oryctolagus cuniculus) of manipulating myxomatosis.Crossref | GoogleScholarGoogle Scholar |
Twigg, L. E., Lowe, T. J., Gray, G. S., Martin, G. T., Wheeler, A. G., and Barker, W. (1998). Spotlight counts, site fidelity and migration of European rabbits (Oryctolagus cuniculus). Wildlife Research 25, 113–122.
| Spotlight counts, site fidelity and migration of European rabbits (Oryctolagus cuniculus).Crossref | GoogleScholarGoogle Scholar |
van Strien, A. J., van Duuren, L., Foppen, R. P. B., and Soldaat, L. L. (2009). A typology of indicators of biodiversity change as a tool to make better indicators. Ecological Indicators 9, 1041–1048.
| A typology of indicators of biodiversity change as a tool to make better indicators.Crossref | GoogleScholarGoogle Scholar |
Villafuerte, R., Kufner, M. B., Delibes, M., and Moreno, S. (1993). Environmental factors influencing the seasonal daily activity of the European rabbit (Oryctolagus cuniculus) in a Mediterranean area. Mammalia 57, 341–348.
| Environmental factors influencing the seasonal daily activity of the European rabbit (Oryctolagus cuniculus) in a Mediterranean area.Crossref | GoogleScholarGoogle Scholar |
Wallage-Drees, J. M. (1988). Rabbits in the coastal sand dunes; weighed and counted. Ph.D. Thesis, Leiden University, Leiden, The Netherlands.
Wallage-Drees, J. M. (1989). A field study on seasonal changes in the circadian activity of rabbits. Zeitschrift fur Saugetierkunde 54, 22–30.